The first link definitely has all 4 slashes before IE sees it -- so consistent with what I was saying above, IE just enforces the URL standard more strictly, it's not wrong.
This is the URL that underlies the first tracked link for all browsers.

In the footer version, there are only 2 slashes:

Note that the first has been defaulted to http, the second is https. This suggests really strongly that there's a typo in the first.
I will say that you shouldn't be using protocol-relative URLs (beginning with //) in email links, as they don't make sense. Relative URLs implicitly create the final URL by prepending the protocol of the mail client that's reading the email, but not all mail clients have a protocol! My Inbox isn't on the web, so it doesn't have a protocol... // has no meaning there.
It's only by luck that Marketo tries (and doesn't necessarily succeed) to fix up the relative URL to an absolute URL if it gets rewritten for tracking. If you avoid protocol-relative URLs you avoid a raft of possible problems.